PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G20610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TCP
Protein Properties Length: 109aa    MW: 11224.8 Da    PI: 11.4504
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G20610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP301.7e-095074832
              TCP  8 hskihTkvggRdRRvRlsaecaarf 32
                      +++h+kv+gR+RRvR+++ caar 
  LPERR02G20610.1 50 AKDRHSKVNGRGRRVRMPIVCAARA 74
                     6899999****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-74973IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MSSRDAAAAT FHVYQPLQIQ AATVAPAAAE AGGAAQLVVP APSKKAAAGA KDRHSKVNGR  60
GRRVRMPIVC AARAAAAATY VPMAQAHHHH LNLLAALSGA ARRAEEESR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615683e-37AK061568.1 Oryza sativa Japonica Group cDNA clone:006-311-F05, full insert sequence.
GenBankAP0040673e-37AP004067.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1581_H09.
GenBankAP0149583e-37AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126103e-37CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953208.11e-18PREDICTED: transcription factor TCP21-like
TrEMBLA0A0D9VIQ01e-70A0A0D9VIQ0_9ORYZ; Uncharacterized protein
STRINGBGIOSGA016791-PA9e-16(Oryza sativa Indica Group)
STRINGORGLA04G0163700.19e-16(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.13e-07TCP family protein